CNV calling from NGS data (It's one of Bioinformatics problems)
Table of Contents
관련자료 #
알려진 프로그램들 #
- Population-level variants
- Somatic CNA
관련 논문 #
- Integrative DNA copy number detection and genotyping from sequencing and array-based platforms bioRxiv : NGS 방법과 SNP array 방법을 통합하여 CNV 분석
- Gene-based comparative analysis of tools for estimating copy number alterations using whole-exome sequencing data Oncotarget : 유전자 중심으로 SNP array 데이터와 WES 데이터 비교
NGS based CNV 도구들 리뷰 #
- Evaluation of somatic copy number estimation tools for whole-exome sequencing data Briefings in Bioinformatics
- Whole-genome CNV analysis: advances in computational approaches Frontiers in Genetics
- CODEX: a normalization and copy number variation detection method for whole exome sequencing Nucleic Acids Research
- An evaluation of copy number variation detection tools from whole-exome sequencing data Human Mutation
- Comparative study of exome copy number variation estimation tools using array comparative genomic hybridization as control BioMed Research International
- Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives BMC Bioinformatics
- Computational methods for detecting copy number variations in cancer genome using next generation sequencing Oncotarget
세미나 동영상 #
Estimating copy number from sequencing platforms -- overview of methods (CoNIFER, xHMM, ngCGH)
How to Detect Copy Number Variations in NGS Data and Integrate with Gene Expression Data
Incoming Links #
[Medical Scholarly Articles] About (MedicalScholarlyArticle 0) #
- Allele-specific copy number profiling by next-generation DNA sequencing
- An evaluation of copy number variation detection tools from whole-exome sequencing data
- Evaluation of somatic copy number estimation tools for whole-exome sequencing data
- Gene-based comparative analysis of tools for estimating copy number alterations using whole-exome sequencing data
- SAAS-CNV: A Joint Segmentation Approach on Aggregated and Allele Specific Signals for the Identification of Somatic Copy Number Alterations with Next-Generation Sequencing Data
[Codes] About (Code 1) #
Related Articles (Article 2) #
Related Education Events (EducationEvent 3) #
Related Medical Scholarly Articles (MedicalScholarlyArticle 4) #
- An evaluation of copy number variation detection tools from whole-exome sequencing data
- SAAS-CNV: A Joint Segmentation Approach on Aggregated and Allele Specific Signals for the Identification of Somatic Copy Number Alterations with Next-Generation Sequencing Data
Related Codes (Code 5) #
Suggested Pages #
- 0.237 Allele-specific copy number
- 0.146 Comparative genomic hybridization
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- 0.025 Identification of cancer-driver genes in focal genomic alterations from whole genome sequencing data
- 0.025 Python
- 0.024 VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- 0.024 The landscape of somatic copy-number alteration across human cancers
- 0.023 Tumorscape
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