Variant Call Format http://en.wikipedia.org/wiki/Variant_Call_Format

유전변이를 담는 가장 일반적인 파일 형식. VCFtools 프로그램으로 쉽게 다룰 수 있다.

관련프로그램

• BCFtools
• pysam: python + htslib
• cyvcf2: Cython + htslib

관련정보

• VCF란, gVCF란, VCF와 gVCF의 차이점 - Variant Calling Format 설명, genomic VCF 2018-03-04: gVCF 는 VCF에 non variant 즉 전체 유전체 위치를 포함함. GATK HaplotypeCaller 실행시 -ERC GVCF 옵션을 주어야 함. 이후, GATK genotypeGVCFs 로 병합 가능
• vcf2maf: VCF 형식을 MAF 형식으로 바꿔주기
• VCF version 4.1 spec.

Incoming Links #

[Codes] About (Code 0) #

• Hail
• VCFtools
• cyvcf2

Related Articles (Article 1) #

• Genome
• NGS

Related Education Events (EducationEvent 2) #

• 2014 농림축산식품 3차 생물정보교육

Related Web Pages (WebPage 3) #

• EGA

Related Medical Scholarly Articles (MedicalScholarlyArticle 4) #

• Comparison of custom capture for targeted next-generation DNA sequencing

Related Codes (Code 5) #

• GEMINI
• Samtools
• bedtools

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