Hail
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- (rev. 3)
- Hyungyong Kim
Structured data
- About
- SNV
- VCF
- URL
- https://hail.is/index.html
Hail is an Open source, scalable framework for exploring and analyzing genetic data. Starting from DNA sequencing or Microarray data in VCF and other formats, Hail can, for example:
- generate variant annotations like call rate, Hardy-Weinberg equilibrium p-value, and population-specific allele count
- generate sample annotations like mean depth, imputed sex, and TiTv ratio
- load variant and sample annotations from text tables, JSON, VCF, VEP, and locus interval files
- produce new annotations computed from existing annotations and the genotypes, and use these to filter samples, variants, and genotypes
- compute sample scores and variant loadings using PCA, or project your cohort onto ancestry coordinates of reference datasets
- perform association analyses with phenotypes and covariates using Linear regression and Logistic regression
Broad Institute에서 Spark으로 만들었다고.
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