adegenet: Exploratory Analysis of Genetic and Genomic Data

Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying Ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.

팁 #

macOS에서 설치시

dlopen(/usr/local/lib/R/3.3/site-library/ape/libs/ape.so, 6): Library not loaded: /usr/local/opt/gcc/lib/gcc/5/libgfortran.3.dylib

메세지와 함께 설치가 안되는 문제가 있다. libgfortran이 버전 6인데 5에서 찾는 문제. 일단 다음처럼 임시 해결 가능

$ cd /usr/local/opt/gcc/lib/gcc
$ ln -s 6 5

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