ClusterCall
#
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- (rev. 5)
- Hyungyong Kim
Structured data
- Programming Language
- R
- URL
- http://potatobreeding.cals.wisc.edu/software/
4배체(tetraploid) SNP array 결과를 genotype call 하는 프로그램 (theta, r --> AAAB or AABB)
Algorithm
- Training phase
- F1 population clustering
- Allele dosages are assigned based on segregation ratios
- Prediction phase
- Sample clustering with training set
- Assign trained value
- Concordance metrix
관련논문
- Automated tetraploid genotype calling by hierarchical clustering Theoretical and Applied Genetics : 알고리즘 설명
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