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Structured data

Programming Language
R
URL

4배체(tetraploid) SNP array 결과를 genotype call 하는 프로그램 (theta, r --> AAAB or AABB)

Algorithm

  1. Training phase
    • F1 population clustering
    • Allele dosages are assigned based on segregation ratios
  2. Prediction phase
    • Sample clustering with training set
    • Assign trained value
    • Concordance metrix

관련논문

  1. Automated tetraploid genotype calling by hierarchical clustering Theoretical and Applied Genetics : 알고리즘 설명

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