Statistical Analysis of Mixed Ploidy Population - 2배체, 4배체 섞여있는 집단에서도 F-statistics 계산

설치시, igraph를 비롯한 다양한 R 패키지들을 설치하는데, OS X에서 문제가 있다. 내부적으로 adegenet을 이용함.

실행 예제

> install.packages('StAMPP')
> library(StAMPP)
> df <- read.table('potato.txt', sep='\t', header=TRUE)
> df.freq <- stamppConvert(df, type='r')
> df.pop <- stamppNeisD(df.freq, TRUE)
> df.fst <- stamppFst(df.freq, 100, 95, 1)
> write.table(df.pop, 'potato.nei.pop.txt')
> write.table(df.fst$Fsts, 'potato.fst.txt')

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