KING
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- (rev. 9)
- Hyungyong Kim
Structured data
KING: Kinship-based INference for Gwas
SNP array 데이터로 부터, 각 샘플들이 어떤 혈연관계인지 추정할 수 있다. 입력자료가 PLINK와 같다.
계산되는 Kinship coefficient와 P(IBD0)로 부터 추정할 수 있는 혈연관계는 다음과 같다.
Relationship | Kinship coefficient | 추정구간 | P(IBD0) | 추정구간 |
---|---|---|---|---|
Monozygotic twin | 1/2 | >0.354 | 0 | <0.1 |
Parent-offspring | 1/4 | 0.177 ~ 0.354 | 0 | <0.1 |
Full sib | 1/4 | 0.177 ~ 0.354 | 1/4 | 0.1 ~ 0.365 |
2nd degree | 1/8 | 0.0884 ~ 0.177 | 1/2 | 0.365 ~ 0.646 |
3rd degree | 1/16 | 0.0442 ~ 0.0884 | 3/4 | 0.646 ~ 0.823 |
Unrelated | 0 | <0.0442 | 1 | >0.823 |
(2nd degree: half-sib, avuncular pairs, grandparent-grandchild pairs; 3rd degree: first cousins)
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