Oncotator
#
Find similar titles
- (rev. 1)
- Hyungyong Kim
Structured data
- About
- Cancer genomics
- Programming Language
- Python
- Provider
- Broad Institute
- URL
- http://portals.broadinstitute.org/oncotator/
Oncotator is a web application for annotating human genomic point mutations and indels with data relevant to Cancer researchers. Annotations are aggregated from the following resources:
- Genomic Annotations
- Gene, transcript, and functional consequence annotations using GENCODE for hg19.
- Reference sequence around a variant.
- GC content around a variant.
- Human DNA Repair Gene annotations from Wood et al.
- Protein Annotations
- Cancer Variant Annotations
- Observed cancer mutation frequency annotations from COSMIC.
- Cancer gene and mutation annotations from the Cancer GenCensus.
- Overlapping mutations from the CCLE.
- Cancer gene annotations from the Familial Cancer Database.
- Cancer variant annotations from ClinVar.
- Non-Cancer Variant Annotations
- Common SNP annotations from dbSNP.
- Variant annotations from 1000 Genomes Project.
- Variant annotations from NHLBI GO Exome Sequencing Project (ESP).
Incoming Links #
[Medical Scholarly Articles] About (MedicalScholarlyArticle 0) #
Suggested Pages #
- 0.025 Somatic mutation
- 0.025 United States
- 0.025 Human genome
- 0.025 BRIC
- 0.025 Methods Molecular Biology
- 0.025 Angiogenesis
- 0.025 October 24
- 0.025
- 0.025 Lipoma
- 0.025 PhyloP
- More suggestions...