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Haploview #
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Haploview is designed to simplify and expedite the process of Haplotype analysis by providing a common interface to several tasks relating to such analyses.

Haploview currently supports the following functionalities:

  • LD & haplotype block analysis
  • haplotype population frequency estimation
  • single SNP and haplotype association tests
  • permutation testing for association significance
  • implementation of Paul de Bakker's Tagger tag SNP selection algorithm.
  • automatic download of phased genotype data from HapMap
  • visualization and plotting of PLINK whole genome association results including advanced filtering options

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