In Bioinformatics, BLAST for Basic Local Alignment Search Tool is an algorithm for comparing primary biological sequence information. (http://en.wikipedia.org/wiki/BLAST)

Hash table로 DB 서열을 단어 테이블로 만들고, 인덱싱함. 이를 빠르게 검색한 후, 높은 점수 서열을 Smith–Waterman algorithm으로 Sequence alignment 수행

데이터베이스 동기화 #

rsync -avz ftp.ncbi.nih.gov::genomes/Bacteria/all.fna.tar.gz /data/ncbi/bacteria/
rsync -avz ftp.ncbi.nih.gov::genomes/Bacteria/all.gbk.tar.gz /data/ncbi/bacteria/

혹은

rsync -avz --exclude=all* ftp.ncbi.nih.gov::genomes/Bacteria/* /data/ncbi/bacteria/

그외에도 여러가지 응용이 가능합니다.

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