BWA (Burrows-Wheeler Aligner) is a software package for mapping low-divergent sequences against a large reference genome, such as the Human genome.

It consists of three algorithms:

1. BWA-backtrack: for Illumina sequence reads up to 100bp
2. BWA-SW: for long reads 70bp to 1Mbp
3. BWA-MEM: for long reads 70bp to 1Mbp. faster and more accurate

기본적인 사용법

bwa index ref.fa
bwa mem ref.fa reads.fq > aln-se.sam
bwa mem ref.fa read1.fq read2.fq > aln-pe.sam

관련정보

• Incodom:BWA
• Snakemake Wrapper BWA MEM

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