VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
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- (rev. 2)
- Hyungyong Kim
Structured data
- About
- RNA-seq
- Date Published
- Publisher
- BMC Genomics
- URL
- https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/pubmed/?term=29649993
Snakemake를 이용하여, 사용자 편의의, 빠르고, 효율적이며, 종합적인 RNA-seq 파이프라인을 만듬. downstream 분석도 포함함.
Table of Contents
Summary #
Background #
Implementation #
Results #
Read alignment, counting and transcript assembly #
Read quality metrics #
Unsupervised clustering of samples #
Differential expression and pathway analysis #
Immunology module #
Other conditional analyses #
Discussion #
Visualization of data #
Snakemake as a framework #
Ease of use #
Comparison to other tools #
Conclusions #
Incoming Links #
Related Articles (Article 0) #
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