Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc. it's Entrez) from a Shell. It's a E-utilities command line interface.

다음 Shell 명령으로 설치

cd ~
perl -MNet::FTP -e '$ftp = new Net::FTP("ftp.ncbi.nlm.nih.gov", Passive => 1); $ftp->login; $ftp->binary; $ftp->get("/entrez/entrezdirect/edirect.zip");'
unzip -u -q edirect.zip
rm edirect.zip
export PATH=$PATH:$HOME/edirect
./edirect/setup.sh

Functions

• Navigation functions
  • esearch
  • elink
  • efilter
• Records can be retrieved
  • efetch
• Desired fields from XML result
  • xtract
• Additional functions
  • einfo
  • epost
  • nquire

관련정보

• Entrez Direct 人CoDOM 2015-03-16
• Exploring Entrez Direct: Parsing the XML Output of E-utilities NCBI Insights 2015-03-13

Incoming Links #

Related Web Pages (WebPage 0) #

• Entrez

Suggested Pages #

• 0.325 RBP2
• 0.075 Prognostic value of PDL1 expression in pancreatic cancer
• 0.030 Role of RBP2-Induced ER and IGF1R-ErbB Signaling in Tamoxifen Resistance in Breast Cancer
• 0.025 PopSet
• 0.025 Hyuna Kim
• 0.025 2008
• 0.025 GTR
• 0.025 UniGene
• 0.025 dbVar
• 0.025 2019
• More suggestions...