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Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data #
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Structured data

About
Fusion gene
Date Published
Publisher
Scientific Reports
URL

RNA-seq 데이터로 Fusion gene 탐지하는 도구들 평가

Summary #

Methods #

Fusion detection software packages #

Datasets #

  • Positive dataset: FusionMap 개발자들에 의해 만들어짐. 57,209개의 합성 pairs of reads. 158bp fragment length. 50 true fusions.
  • Negative dataset: 6 sets of paired-end reads (50nt, 75nt, 100nt)
  • Mixed dataset: combining neg and pos
  • Test dataset: HiSeq 2000 paired-end RNA-seq reads 6 runs

Data analysis #

  1. Sensitivity (%) = (TP/TF) * 100
  2. Positive predictive value (PPV) (%) = (TP/TP+FP) * 100

Results #

Positive datasets #

Mixed dataset #

Test dataset #

Discussion #

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