schema:"MedicalScholarlyArticle"

Complex disease and phenotype mapping in the domestic dog
A GWAS assessment of the contribution of genomic imprinting to the variation of body mass index in mice
A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns
A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE)
A fremawork for the interpretation of de novo mutation in human disease
A high density SNP array for the domestic horse and extant Perissodactyla: utility for association mapping, genetic diversity, and phylogeny studies
A mutational signature in gastric cancer suggests therapeutic strategies
Allele-specific copy number profiling by next-generation DNA sequencing
An evaluation of copy number variation detection tools from whole-exome sequencing data
An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer
An integrative somatic mutation analysis to identify pathways linked with survival outcomes across 19 cancer types
Analysis of East Asia genetic substructure using genome-wide SNP arrays
Analytical and Clinical Validation of a Digital Sequencing Panel for Quantitative, Highly Accurate Evaluation of Cell-Free Circulating Tumor DNA
BCL11A is a triple-negative breast cancer gene with critical functions in stem and progenitor cells
Biomarkers in triple negative breast cancer: A review
Breast cancer epigenetics: from DNA methylation to microRNAs
CDK12 Inhibition Reverses De Novo and Acquired PARP Inhibitor Resistance in BRCA Wild-Type and Mutated Models of Triple-Negative Breast Cancer
CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer
CODEX: a normalization and copy number variation detection method for whole exome sequencing
Cancer Target Gene Screening: a web application for breast cancer target gene screening using multi-omics data analysis
Cancer genomics: from discovery science to personalized medicine
Cancer-specific defects in DNA repair pathways as targets for personalized therapeutic approaches
Challenges in analysis and interpretation of microsatellite data for population genetic studies
Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data
Comparison of custom capture for targeted next-generation DNA sequencing
Complex landscapes of somatic rearrangement in human breast cancer genomes
Comprehensive functional analysis of the tousled-like kinase 2 frequently amplified in aggressive luminal breast cancers
Comprehensive molecular portraits of human breast tumours
Computational methods for detecting copy number variations in cancer genome using next generation sequencing
Covalent modifications of histones during development and disease pathogenesis
DOT1L cooperates with the c-Myc-p300 complex to epigenetically derepress CDH1 transcription factors in breast cancer progression
Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller
Drug repurposing: progress, challenges and recommendations
Evaluation of Transfer Learning with Deep Convolutional Neural Networks for Screening Osteoporosis in Dental Panoramic Radiographs
Evaluation of somatic copy number estimation tools for whole-exome sequencing data
Gene Essentiality Profiling Reveals Gene Networks and Synthetic Lethal Interactions with Oncogenic Ras
Gene-based comparative analysis of tools for estimating copy number alterations using whole-exome sequencing data
Genetic alterations of histone lysine methyltransferases and their significance in breast cancer
Genetic alterations of triple negative breast cancer by targeted next-generation sequencing and correlation with tumor morphology
Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer
Genome-wide association study identifies 74 loci associated with educational attainment
Genomic Selection in Aquaculture: Application, Limitations and Opportunities With Special Reference to Marine Shrimp and Pearl Oysters
Genomic portrait of resectable hepatocellular carcinomas: implications of RB1 and FGF19 aberrations for patient stratification
Global transcription network incorporating distal regulator binding reveals selective cooperation of cancer drivers and risk genes
Human genetic variation database, a reference database of genetic variations in the Japanese population
Identification of cancer-driver genes in focal genomic alterations from whole genome sequencing data
Identification of druggable cancer driver genes amplified across TCGA datasets
Identification of gene-drug interactions that impact patient survival in TCGA
Is the future of personalized therapy in triple-negative breast cancer based on molecular subtype
JARID1B is a luminal lineage-driving oncogene in breast cancer
Landscape of somatic mutations in 560 breast cancer whole-genome sequences
MEDICI: Mining Essentiality Data to Identify Critical Interactions for Cancer Drug Target Discovery and Development
MEL-18 loss mediates estrogen receptor–α downregulation and hormone independence
MPD: multiplex primer design for next-generation targeted sequencing
Mechanisms underlying mutational signatures in human cancers
Meta-analysis of the global gene expression profile of triple-negative breast cancer identifies genes for the prognostication and treatment of aggressive breast cancer
Metagenomics - a guide from sampling to data analysis
Methods of integrating data to uncover genotype–phenotype interactions
Microsatellite instability in colorectal cancer
Molecular and genetic properties of tumors associated with local immune cytolytic activity
Mutational processes molding the genomes of 21 breast cancers
Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response
Next-Generation Sequencing of Circulating Tumor DNA for Early Cancer Detection
Oncotator: cancer variant annotation tool
Pathway and network analysis of cancer genomes
Patterns of somatic mutation in human cancer genomes
Polycomb regulates mesoderm cell fate-specification in embryonic stem cells through activation and repression mechanisms
Practical guidelines for the comprehensive analysis of ChIP-seq data
Predicting cancer-specific vulnerability via data-driven detection of synthetic lethality
Principal component analysis reveals the 1000 Genomes Project does not sufficiently cover the human genetic diversity in Asia
Prognostic value of PDL1 expression in pancreatic cancer
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals
Robust relationship inference in genome-wide association studies
Role of RBP2-Induced ER and IGF1R-ErbB Signaling in Tamoxifen Resistance in Breast Cancer
SAAS-CNV: A Joint Segmentation Approach on Aggregated and Allele Specific Signals for the Identification of Somatic Copy Number Alterations with Next-Generation Sequencing Data
Semantic data integration for toxicogenomic laboratory experiment management systems
Sequence analysis of mutations and translocations across breast cancer subtypes
Smyd3 Is a Transcriptional Potentiator of Multiple Cancer-Promoting Genes and Required for Liver and Colon Cancer Development
Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data
The BioPAX community standard for pathway data sharing
The Impact of Mutations in SARS-CoV-2 Spike on Viral Infectivity and Antigenicity
The cancer genome
The dynamics of the piglet gut microbiome during the weaning transition in association with health and nutrition
The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups
The landscape of somatic copy-number alteration across human cancers
The life history of 21 breast cancers
The topography of mutational processes in breast cancer genomes
Therapeutic opportunities within the DNA damage response
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
Triple-negative breast cancer: an unmet medical need
Tumor suppressor SET9 guides the epigenetic plasticity of breast cancer cells and serves as an early-stage biomarker for predicting metastasis
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine
hppRNA-a Snakemake-based handy parameter-free pipeline for RNA-Seq analysis of numerous samples