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  • Complex disease and phenotype mapping in the domestic dog
  • A GWAS assessment of the contribution of genomic imprinting to the variation of body mass index in mice
  • A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE)
  • A fremawork for the interpretation of de novo mutation in human disease
  • A high density SNP array for the domestic horse and extant Perissodactyla: utility for association mapping, genetic diversity, and phylogeny studies
  • A mutational signature in gastric cancer suggests therapeutic strategies
  • Allele-specific copy number profiling by next-generation DNA sequencing
  • An evaluation of copy number variation detection tools from whole-exome sequencing data
  • An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer
  • An integrative somatic mutation analysis to identify pathways linked with survival outcomes across 19 cancer types
  • Analysis of East Asia genetic substructure using genome-wide SNP arrays
  • Analytical and Clinical Validation of a Digital Sequencing Panel for Quantitative, Highly Accurate Evaluation of Cell-Free Circulating Tumor DNA
  • BCL11A is a triple-negative breast cancer gene with critical functions in stem and progenitor cells
  • Biomarkers in triple negative breast cancer: A review
  • Breast cancer epigenetics: from DNA methylation to microRNAs
  • CDK12 Inhibition Reverses De Novo and Acquired PARP Inhibitor Resistance in BRCA Wild-Type and Mutated Models of Triple-Negative Breast Cancer
  • CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer
  • CODEX: a normalization and copy number variation detection method for whole exome sequencing
  • Cancer genomics: from discovery science to personalized medicine
  • Cancer-specific defects in DNA repair pathways as targets for personalized therapeutic approaches
  • Challenges in analysis and interpretation of microsatellite data for population genetic studies
  • Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
  • Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data
  • Comparison of custom capture for targeted next-generation DNA sequencing
  • Complex landscapes of somatic rearrangement in human breast cancer genomes
  • Comprehensive functional analysis of the tousled-like kinase 2 frequently amplified in aggressive luminal breast cancers
  • Comprehensive molecular portraits of human breast tumours
  • Computational methods for detecting copy number variations in cancer genome using next generation sequencing
  • Covalent modifications of histones during development and disease pathogenesis
  • DOT1L cooperates with the c-Myc-p300 complex to epigenetically derepress CDH1 transcription factors in breast cancer progression
  • Evaluation of somatic copy number estimation tools for whole-exome sequencing data
  • Gene Essentiality Profiling Reveals Gene Networks and Synthetic Lethal Interactions with Oncogenic Ras
  • Gene-based comparative analysis of tools for estimating copy number alterations using whole-exome sequencing data
  • Genetic alterations of histone lysine methyltransferases and their significance in breast cancer
  • Genetic alterations of triple negative breast cancer by targeted next-generation sequencing and correlation with tumor morphology
  • Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer
  • Genome-wide association study identifies 74 loci associated with educational attainment
  • Genomic portrait of resectable hepatocellular carcinomas: implications of RB1 and FGF19 aberrations for patient stratification
  • Global transcription network incorporating distal regulator binding reveals selective cooperation of cancer drivers and risk genes
  • Human genetic variation database, a reference database of genetic variations in the Japanese population
  • Identification of cancer-driver genes in focal genomic alterations from whole genome sequencing data
  • Identification of druggable cancer driver genes amplified across TCGA datasets
  • Identification of gene-drug interactions that impact patient survival in TCGA
  • Is the future of personalized therapy in triple-negative breast cancer based on molecular subtype
  • JARID1B is a luminal lineage-driving oncogene in breast cancer
  • Landscape of somatic mutations in 560 breast cancer whole-genome sequences
  • MEDICI: Mining Essentiality Data to Identify Critical Interactions for Cancer Drug Target Discovery and Development
  • MEL-18 loss mediates estrogen receptor–α downregulation and hormone independence
  • MPD: multiplex primer design for next-generation targeted sequencing
  • Mechanisms underlying mutational signatures in human cancers
  • Meta-analysis of the global gene expression profile of triple-negative breast cancer identifies genes for the prognostication and treatment of aggressive breast cancer
  • Metagenomics - a guide from sampling to data analysis
  • Methods of integrating data to uncover genotype–phenotype interactions
  • Microsatellite instability in colorectal cancer
  • Molecular and genetic properties of tumors associated with local immune cytolytic activity
  • Mutational processes molding the genomes of 21 breast cancers
  • Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response
  • Next-Generation Sequencing of Circulating Tumor DNA for Early Cancer Detection
  • Oncotator: cancer variant annotation tool
  • Pathway and network analysis of cancer genomes
  • Patterns of somatic mutation in human cancer genomes
  • Polycomb regulates mesoderm cell fate-specification in embryonic stem cells through activation and repression mechanisms
  • Practical guidelines for the comprehensive analysis of ChIP-seq data
  • Predicting cancer-specific vulnerability via data-driven detection of synthetic lethality
  • Principal component analysis reveals the 1000 Genomes Project does not sufficiently cover the human genetic diversity in Asia
  • Prognostic value of PDL1 expression in pancreatic cancer
  • Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals
  • Robust relationship inference in genome-wide association studies
  • SAAS-CNV: A Joint Segmentation Approach on Aggregated and Allele Specific Signals for the Identification of Somatic Copy Number Alterations with Next-Generation Sequencing Data
  • Semantic data integration for toxicogenomic laboratory experiment management systems
  • Sequence analysis of mutations and translocations across breast cancer subtypes
  • Smyd3 Is a Transcriptional Potentiator of Multiple Cancer-Promoting Genes and Required for Liver and Colon Cancer Development
  • Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data
  • The BioPAX community standard for pathway data sharing
  • The cancer genome
  • The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups
  • The landscape of somatic copy-number alteration across human cancers
  • The life history of 21 breast cancers
  • The topography of mutational processes in breast cancer genomes
  • Therapeutic opportunities within the DNA damage response
  • Triple-negative breast cancer: an unmet medical need
  • Tumor suppressor SET9 guides the epigenetic plasticity of breast cancer cells and serves as an early-stage biomarker for predicting metastasis
  • VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
  • Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine
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